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Monthly Archives: August 2004
Jalview
Jalview is a multiple alignment editor written entirely in java. Find Jalview at: http://www.ebi.ac.uk/~michele/jalview/
Posted in Bioinformatics
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Readseq
Read & reformat biosequences Find Readseq at: http://iubio.bio.indiana.edu/soft/molbio/readseq/java/
Posted in Bioinformatics
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When more is more: Parallel Computing
We’ve added two new links to very useful tools for scientific programming. Both are in our Data Communication section. MPICH is the ubiquitous MPI implementation, which our own research groups have been using for years. LAM/MPI is a newer MPI … Continue reading
Posted in Software
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LAM/MPI Parallel Computing
LAM/MPI is a high-quality open-source implementation of the Message Passing Interface specification, including all of MPI-1.2 and much of MPI-2. Intended for production as well as research use, LAM/MPI includes a rich set of features for system administrators, parallel programmers, … Continue reading
Posted in Data Communication
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Monte Carlo
There is a new user-suggested entry today in our Monte Carlo methods section. MCCCS Towhee is an advanced Monte Carlo simulation package which can do Gibbs ensemble MC simulations in liquid, solid, and porous phases. Do you have a favorite … Continue reading
Posted in Software
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MCCCS Towhee
Towhee is a Monte Carlo molecular simulation code originally designed for the prediction of fluid phase equilibria using atom-based force fields and the Gibbs ensemble with particular attention paid to algorithms addressing molecule conformation sampling. The code has subsequently been … Continue reading
Posted in Monte Carlo methods
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ChemCraft
A new user-suggested entry today in Molecule Viewers and Editors. Grigoriy Zhurko pointed out ChemCraft, which is a windows-based viewer for looking at the orbitals calculated in GAMESS or Gaussian. The source code (in Delphi) is available.
What’s your favorite plotting program?
Join us over in the Forums to discuss Plots and Graphs. What do you use for day-to-day plotting of your data? What do you use for presentation-quality plots? What are your other essential tools for doing science?
Posted in Software
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Link Ratings
We’ve got link ratings enabled. If you click on a link from the OpenScience site and return to our page, you’ll be asked to rate the site you’ve just visited on a 1 to 5 scale. This should help us … Continue reading
Posted in Meta
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RDF / XML feed
See that button over there on the right hand side? You can now add OpenScience to your daily RSS reader and get instant updates on the latest cool software we’re featuring.
Posted in Meta
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