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Monthly Archives: March 2004
Genie
A program for the inference of demographic history from molecular phylogenies. It is primarily designed for the analysis of phylogenies reconstructed from highly variable viral gene sequences, but can be applied to other types of sequence data that contains a … Continue reading
Phylogen
Phylogen implements some straight-forward birth-death models for simulating phylogenies. It is intended to be fast and flexible and can simulate very large trees (depending on memory and speed of computer). It will then optionally reconstruct trees only containing extant lineages … Continue reading
Evolution and Population Genetics Day!
Thursday is Evolution and Population Genetics day. Two new links, both from the Oxford Evolutionary Biology Group. Genie infers demographic history from molecular phylogenies, and Phyl-O-Gen uses some straight-forward birth-death models to simulate phylogenies.
Posted in Software
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Fermitools
Fermitools is an effort to provide the internet community with the Fermilab developed software packages that we have found most useful, and that we believe have general value to other application domains. The Fermilab Computing Division is offering this software … Continue reading
Posted in High Energy
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CalcHEP
The CalcHEP package was created for calculation of multiparticle final states in collision and decay processes. The main idea in CalcHEP was to enable one to go directly from the lagrangian to the cross sections and distributions effectively, with the … Continue reading
Posted in High Energy
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CompHEP
A package for evaluation of Feynman diagrams and integration over multi-particle phase space. Find CompHEP at: http://comphep.sinp.msu.ru/
Posted in High Energy
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High-energy Physics day
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Simbrain
SIMBRAIN is a freeware tool for building, runnning, and analyzing neural-networks (computer simulations of brain circuitry). Simbrain aims to be as visual and easy-to-use as possible. Also unique are its integrated "world component" and its representation of the network’s activation … Continue reading
Posted in Neural Networks
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SIM_AGENT
The SimAgent toolkit provides a range of resources for research and teaching related to the development of interacting agents in environments of various degrees and kinds of complexity. It can be run as a pure simulation tool, or installed in … Continue reading
Posted in Cognitive Science
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New CogSci links
Today we’ve been searching for some new Cognitive Science software, and have found some interesting entries. SIM_AGENT is a tool for studying cognition and affect. Simbrain is a freeware tool for building, runnning, and analyzing neural-networks.
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