OpenScience / Software / Life Sciences / Ecology



Genie

Posted on March 25, 2004 by Dan Gezelter

A program for the inference of demographic history from molecular phylogenies. It is primarily designed for the analysis of phylogenies reconstructed from highly variable viral gene sequences, but can be applied to other types of sequence data that contains a … Continue reading →

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Posted in Evolution and Population Genetics | Leave a comment

Phylogen

Posted on March 25, 2004 by Dan Gezelter

Phylogen implements some straight-forward birth-death models for simulating phylogenies. It is intended to be fast and flexible and can simulate very large trees (depending on memory and speed of computer). It will then optionally reconstruct trees only containing extant lineages … Continue reading →

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Posted in Evolution and Population Genetics | Leave a comment

ADS in ADE-4 : Spatial Data Analysis

Posted on January 30, 2003 by Dan Gezelter

ADS in ADE-4is a package devoted to multiscale analysis of spatial point patterns. The proposed methods are based on the analysis of inter-point distances, which necessitate the location of individuals in (x;y) coordinates within a given study area. These methods, … Continue reading →

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Posted in Statistical | Leave a comment

Ecolab

Posted on February 24, 2001 by Dan Gezelter

Ecolab is both the name of a software package and a research project that is looking at the dynamics of evolution. Find Ecolab at: http://ecolab.sourceforge.net/

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Posted in Evolution and Population Genetics | Leave a comment

Spatial Modeling Environment

Posted on February 24, 2001 by Dan Gezelter

The Spatial Modeling Environment (SME) is an integrated environment for high performance spatial modeling which transparently links icon-based modeling tools with advanced computing resources to support dynamic spatial modeling of complex systems Find Spatial Modeling Environment at: http://sourceforge.net/projects/smodenv/

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Posted in Theoretical | Leave a comment