Category Archives: Ecology

Genie

A program for the inference of demographic history from molecular phylogenies. It is primarily designed for the analysis of phylogenies reconstructed from highly variable viral gene sequences, but can be applied to other types of sequence data that contains a … Continue reading

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Phylogen

Phylogen implements some straight-forward birth-death models for simulating phylogenies. It is intended to be fast and flexible and can simulate very large trees (depending on memory and speed of computer). It will then optionally reconstruct trees only containing extant lineages … Continue reading

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ADS in ADE-4 : Spatial Data Analysis

ADS in ADE-4is a package devoted to multiscale analysis of spatial point patterns. The proposed methods are based on the analysis of inter-point distances, which necessitate the location of individuals in (x;y) coordinates within a given study area. These methods, … Continue reading

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Ecolab

Ecolab is both the name of a software package and a research project that is looking at the dynamics of evolution. Find Ecolab at: http://ecolab.sourceforge.net/

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Spatial Modeling Environment

The Spatial Modeling Environment (SME) is an integrated environment for high performance spatial modeling which transparently links icon-based modeling tools with advanced computing resources to support dynamic spatial modeling of complex systems Find Spatial Modeling Environment at: http://sourceforge.net/projects/smodenv/

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